Cython bindings and Python interface to HMMER3.
A package to annotate protein sequences
Annotate DNA sequences for Gene Ontology terms
A Pure-Python parser of HMMER3 output
Django website project for common sequence search tools.
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
Query sequence database by HMMs arranged in predefined synteny structure
A lightweight rewrite of run_dbcan for better multithread performance
An ML-based predictor of GPCR/G-protein couplings using only sequence information
basic visualization of hmm profile matches to multiple fasta files
Command-line tools for genomics and proteomics analysis
MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.
Create HMMs from KEGG orthologs
This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.
Pipeline to fetch species assemblies from NCBI, run MacSyFinder per genome, and emit clean system/component matrices.
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
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