bbduk

Here are 3 public repositories matching this topic...

bbushnell / BBTools

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

Updated Jun 2, 2026
Java

pommevilla / snakemake-genome-assembly-practice

Star

bioinformatics snakemake genome-assembly fastp unicycler bbduk checkm2

Updated Nov 27, 2023
Python

A contract‑driven HPC pipeline for FASTQ trimming using BBDUK or Trimmomatic, featuring strict preflight validation, explicit SLURM ABI propagation, deterministic tool installation, and restart‑safe per-sample execution.

bash workflow bioinformatics genomics hpc reproducible-research sequencing slurm trimming fastq data-pipeline adapter-trimming trimmomatic hpc-workflow bbduk

Updated Jun 2, 2026
Shell

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